ENGINEERING RESEARCH PAPERS

BIOINFORMATICS IEEE PAPER 2018




DincRNA: a comprehensive web-based bioinformatics toolkit for exploring disease associations and ncRNA function
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ABSTRACT Summary: DincRNA aims to provide a comprehensive web-based bioinformatics toolkit to elucidate the entangled relationships among diseases and non-coding RNAs (ncRNAs) from the perspective of disease similarity. The quantitative way to illustrate

Bioinformatics and Biometrics for the Australian Grains Industry Technical Report Series Analysis Report: CAIGE Bread Wheat Yield Trial MET 2017
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1 Executive Summary This report describes the analysis of the CAIGE Bread Wheat yield Multi Environment Trial (MET) analysis for 2017. The data were provided in a timely manner and in a consistent format following the ICIS database conventions. The data are available

Microarray expression profiling and bioinformatics analysis of circular RNA expression in lung squamous cell carcinoma
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ABSTRACT : Circular RNAs (circRNAs) are novel noncoding RNAs with a wide range of physiological and pathological activities. However, the expression profile and roles in lung squamous cell carcinoma (LSCC) remain largely unknown. Therefore, we investigated the

Using bioinformatics for the identification of key peptides to engineer dopamine neurons. Towards a therapy for Parkinsons disease.
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ABSTRACT Parkinsons disease is a widespread condition caused by degeneration of dopamine neurons in the midbrain. A number of proteins are known to be important to signalling mechanisms present in the midbrain during natural dopamine neuron

Bioinformatics tools for quantitative and functional metagenome and metatranscriptome data analysis in microbes
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Page 1. CORRIGENDUM Bioinformatics tools for quantitative and functional metagenome and metatranscriptome data analysis in microbes Sheng-Yong Niu, Jinyu Yang, Adam McDermaid, Jing Zhao, Yu Kang and Qin Ma Briefings in Bioinformatics 2017. https://doi.org/10.1093/bib

Letter to the Editor: Bioinformatics Analysis in Downstream Genes of the mTOR Pathway to Predict Recurrence and Progression of Bladder Cancer
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We are noticed that the authors only consider gene expression values for detecting differentially expressed genes (DEGs) after small interfering RNA (siRNA) or rapamycin treatment. Actually, due to the high false positive caused by a huge number of probes and multiple

SECAPR-A bioinformatics pipeline for the rapid and user-friendly alignment of hybrid enrichment sequences, from raw reads to alignments
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ABSTRACT Evolutionary biology has entered an era of unprecedented amounts of DNA sequence data, as new sequencing platforms such as Massive Parallel Sequencing (MPS) can generate billions of nucleotides within less than a day. The current bottleneck is how to

Cognitive Science and Health Bioinformatics
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The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general

Clinical Bioinformatics : Linking Pharmacogenomics with Informatics
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Pharmacogenomics focuses on personalized medicine to identify for individuals differences in disease diagnosis, experience, and therapy response. Integration of bioinformatics in pharmacogenomics offers reduction in healthcare costs by improving our ability to quickly

Potential targets and clinical value of miR-490-5p in hepatocellular carcinoma: a study based on TCGA, qRT-PCR and bioinformatics analyses
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ABSTRACT : Objective: To explore potential targets and clinical value of miR-490-5p in the oncogenesis and progression of hepatocellular carcinoma (HCC). Methods: Clinical value of miR-490-5p was accessed through The Cancer Genome Atlas (TCGA) and qRT-PCR

Bioinformatics Tools to Make Possible to Use High-Throughput Data in Clinical Activitiess
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ABSTRACT High-Throughput methodologies like Next Generation Sequencing (NGS), Genome Wide Association Study (GWAS), gene expression and Single Nucleotide Polymorphism- SNP microarrays, and Mass-Spectrometry are moving traditional science like medicine and

2nd Argentine Symposium of Young Bioinformatics Researchers (2SAJIB) organized by the ISCB-SC RSG-Argentina
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ABSTRACT The 2nd Argentine Symposium of Young Bioinformatics Researchers (2SAJIB, according to its acronym in Spanish) took place on November 2017 in Buenos Aires, Argentina. SAJIB is the main annual student-based activity in the field of Bioinformatics and

A Bioinformatics Approach to Analyzing the Pathogenicity of Mutations by Using Protein Structure Information: A Study on DNA Polymerase Gamma
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Genetic testing is becoming more and more prevalent in the field of medicine. The bottleneck in making a diagnosis based on genetic information has shifted from being able to acquire the required information by sequencing the genome of a patient, to understanding

We trust you will find these DBs worth exploring, and will make use of their big data and bioinformatics systems in your studies. Each year we seek to improve the
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This year marks the eighth publication of the Database (DB) Issue in Plant and Cell Physiology (available at https://academic. oup.com/pcp/issue/59/1). Similar to previous issues (Matsuoka 2011, Matsuoka and Yano 2012, Obayashi and Yano 2013, Obayashi and Yano 2014, Ohyanagi

Bioinformatics bty027, https://doi. org/10.1093/ bioinformatics /bty027 (2018)
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ABSTRACT ADEPTUS is a web-tool that enables various functional genomics analyses based on a high quality curated database spanning> 38,000 gene expression profiles and> 100 diseases. It offers four types of analysis.(1) For a gene list provided by the user it computes

A Comprehensive Study of Data Mining Techniques in Healthcare, Medical, and Bioinformatics
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ABSTRACT Data mining and Data warehousing is an imperative part of research and is realistically used in different domains like finance, clinical research, education, retail, e- business, marketing, health care etc. Health care is an active interdisciplinary area which is

of hub genes and key pathways associated with two subtypes of diffuse large B-cell lymphoma based on gene expression profiling via integrated bioinformatics
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ABSTRACT There is a significant difference in prognosis between the germinal center B cell (GCB) and activated B cell (ABC) subtypes of diffuse large B cell lymphoma (DLBCL). However, the signaling pathways and driver genes involved in these disparate subtypes are

Identification of Key Genes and miRNAs on Osteosarcoma Patients with Chemoresistance by Bioinformatics Analysis
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Osteosarcoma is one of the most common primary malignant bone tumors in children and adolescents. The worldwide morbidity rates of osteosarcoma are approximately with an average incidence of 3.1 per million for each stages and 4.4 per million for groups25 years

Effects of Ampicillin on the Gut Microbiome of an Adult Male as Determined by 16S rRNA V4 Metagenomics Sequencing and Greengenes Bioinformatics Suite
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ABSTRACT Aims: To determine the effects of ampicillin on the relative abundance of the gut microbiota using Next Generation Sequencing (NGS) metagenomics platform and to predict metabolic functions with bioinformatics suite. Methods: The subject who has taken no

Bioinformatics and Functional Analysis of MicroRNAs that Regulate Expression of Human Fatty Acid Synthase Gene
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fatty acid synthase (hFASN) microRNA (miRNA) hFASN

Advances and applications of bioinformatics in Sericultural research
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ABSTRACT Seri bioinformatics tools and techniques not only facilitated detection of proteomic and genomic diversity among the species/strains, but also resulted in finding a gap in the silkworm genome sequence of a strain that diverged during the course of domestication

AdaSampling for Positive-Unlabeled and Label Noise Learning with Bioinformatics Applications
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ABSTRACT Class labels are required for supervised learning but may be corrupted or missing in various applications. In binary classification, for example, when only a subset of positive instances is labeled whereas the remaining are unlabeled, positiveunlabeled learning is This monograph presents an introduction to using the Wolfram Language for Bioinformatics . The content stems from many years of using the Wolfram Language, previously as Mathematica, in different fields: initially as an undergraduate, doing differential equations
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